在上面的ReSulT中,我们介绍了BbRAG1L和bbRAG2L的特点和在在体转移(ex vivo)的情况,这次我们要研究在体外(in vitro)的情况。
在这次的实验中,首先
We co-purified full-length bbRAG1L and bbRAG2L, each fused at its N terminus to maltose binding protein (MBP), from mammalian cells and performed cleavage reactions using substrates containing either a 5′-TIR/3′-TIR pair or a 12RSS/23RSS pair
所谓TRI pair,RSS pair就是两个转座子对(Figure 5B)
反应需要镁离子和一种人DNA结合蛋白HMGB1。可以看到bbRAG1L/bbRAG2L选手非常给力
Co-expressed bbRAG1L/bbRAG2L exhibited robust cleavage activity on the TIR substrate, with cleavage products detectable as early as 2 min.
我们想对比RAG1/2和bbRAG1L/2L的功能,于是
co-expressed RAG1/2 cleaved the RSS substrate with similar kinetics (lanes 6–10). Cleavage products had the sizes expected for double-strand breaks at the borders of the TIRs or RSSs, with both enzymes generating substantial amounts of the double-cleavage product (double asterisks). Some differences were noted in the pattern of cleavage products generated by bbRAG1L/2L as compared to RAG1/2.
那么不同在哪里?
BbRAG1L/2L generated a product corresponding to single cleavage at the 3′ TIR (asterisk), which was visible at 2 min and accumulated to high levels over the 30-min time course. In contrast, RAG1/2 generated predominantly the double-cleavage product, with single-cleavage products visible as minor species only at later time points, consistent with RAG’s well-known propensity to perform coordinated cleavage at a 12/23 RSS pair
从图中也可以看出,RAG1/2主要产生两边的切断,而BbRAG1L/2L主要产生一边的切断。
之后,我们开始探究BbRAG1L/2L产生活性的条件,我们发现BbRAG1L/2L两种蛋白必须同时存在,并且突变掉D701之后,该酶也失活了。同时,该任性的酶在RSS位点活性非常弱。更甚于它的兄弟RAG1/2,BbRAG1L/2L更加依赖HMGB1以及Mg2+、Mn2+两种金属阳离子。
为了测试BbRAG1L/2L和RAG1/2是否都是相似的发夹剪切机制(图上有)
cleavage reactions were performed using an end-labeled 3′-TIR DNA substrate, with the cleavage products analyzed by denaturing gel electrophoresis
实验的结果证明:确实一样。