linux 软件安装
下载conda wget
+网址链接
bio04@VM-0-10-ubuntu:~/biosoft$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
安装 install
+xxx.sh
激活 安装的程序 source ~/.bashrc
bio04@VM-0-10-ubuntu:~/biosoft$ source ~/.bashrc
添加镜像,加快conda内软件下载
(base) bio04@VM-0-10-ubuntu:~/biosoft$ conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
bioconda
conda config --set show_channel_urls yes(base) bio04@VM-0-10-ubuntuhttps://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
(base) bio04@VM-0-10-ubuntu:~/biosoft$ conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
(base) bio04@VM-0-10-ubuntu:~/biosoft$ conda config --set show_channel_urls yes
使用conda
查看软件:conda list
搜索软件:conda search fastqc
安装软件:conda install fastqc -y
卸载:conda remove fastqc -y
查看conda环境
conda info --envs
创建新的环境:conda create -n genome python=3 fastqc trimmomatic -y
激活新的环境:conda activate genome
退出当前环境conda deactivate