install
sudo apt install hmmer
wget https://github.com/matsen/pplacer/releases/download/v1.1.alpha17/pplacer-Linux-v1.1.alpha17.zip
unzip pplacer-Linux-v1.1.alpha17.zip
cd pplacer-Linux-v1.1.alpha17/
cp guppy pplacer rppr /usr/local/bin/
sudo pip install checkm-genome
wget https://data.ace.uq.edu.au/public/CheckM_databases/checkm_data_2015_01_16.tar.gz
tar -zxvf checkm_data_2015_01_16.tar.gz
checkm data setRoot
/home/llt/database/checkm
usage
checkm merge -x fasta -t 8 /home/llt/database/checkm/hmms/checkm.hmm /home/llt/experiment/data/clean/subsamble_30m/assembly_spades/maxbin/1000/taxon_filtered_out/ merge_out
